Mosaic pro 1.0.10 how to#
Mosaic pro 1.0.10 software#

Get assembly statistics from FASTA and FASTQ files.Įstimating an unrooted species tree given a set of unrooted gene trees. IBM Aspera Connect is an install-on-demand application that facilitates high-speed uploads and downloads with an Aspera transfer server.

Mosaic pro 1.0.10 software#

Scaffold genome sequence assemblies using linked read sequencing dataĮstimating Ancestral recombination graphsĪn Integrated Software for Population Genetics Data AnalysisĪ set of simulation tools to generate synthetic next-generation sequencing reads. The main known usage of Ant is the build of Java applications.ĪntiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes.

The software can handle a number of different input types from mapped reads to imputed genotype probabilities.Īpache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. NCBI Antimicrobial Resistance Gene FinderĬ++ software for evolutionary genetic analysis.ĪNGSD is a software for analyzing next generation sequencing data. This is a completely new model that was entered in CASP14 and published in Nature.ĪMOS is a collection of tools and class interfaces for the assembly of DNA reads.ĪMPHORA is an Automated Phylogenomic Inference Pipeline for bacterial sequencesĬall haplotype variants using amlicon sequencing data This package provides an implementation of the inference pipeline of AlphaFold v2.0. The ALDER software computes the weighted linkage disequilibrium (LD) statistic for making inference about population admixture.ĭetects SNVs from ChIP-seq or RNA-seq experiments.ĪLLMAPS is capable of computing a scaffold ordering that maximizes the colinearity to a collection of maps, including genetic, physical or comparative maps into the final chromosome build. Software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets.Īpproximate GREP for fast fuzzy string searching. The ADMIXTOOLS package implements 5 methods described in Patterson et al (2012) Ancient Admixture in Human History. a phylogeny and some traits measured for each taxa.

Multivariate tools to analyze comparative data, i.e. Remove adapters from sequences in either single end or paired end experiments

Mass screening of contigs for antimicrobial resistance or virulence genes.ĪBruijn is a de novo assembler for PacBio and Oxford Nanopore Technologies reads.

Mosaic pro 1.0.10 how to#

Please check detailed information before running any program, it mayĬontain important instruction on how to properly use the software in BioHPC Cloud.Īssembly and alignment software for 454 or other long reads.Ī genome assembly pipeline for bacteria and archaea